The structure of a putative malate/lactate dehydrogenase from E. coli.
Cuff, M.E., Skarina, T., Edwards, A., Savchenko, A., Cymborowski, M., Minor, W., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Malate/L-lactate dehydrogenases | A, B | 385 | Escherichia coli (strain K12) | Mutation(s): 0  Gene Names: hcxB (ybiC) EC: 1.1.1.- |
Find proteins for P30178 (Escherichia coli (strain K12)) Go to UniProtKB:  P30178 |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | A, B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | ![]() |  Ligand Interaction | |
EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
NAD Query on NAD | A, B | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | ![]() |  Ligand Interaction | |
1PE Query on 1PE | A | PENTAETHYLENE GLYCOL PEG400 C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 139.095 | α = 90.00 |
b = 139.095 | β = 90.00 |
c = 151.654 | γ = 120.00 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
DM | phasing |
Coot | model building |
SBC-Collect | data collection |
O | model building |
HKL-3000 | phasing |
HKL-2000 | data scaling |
RESOLVE | phasing |
ARP/wARP | model building |
SHELX | phasing |
MLPHARE | phasing |