2G2R | pdb_00002g2r

Green-fluorescent antibody 11G10 in complex with its hapten (nitro-stilbene derivative)

• PDB DOI: https://doi.org/10.2210/pdb2G2R/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2006-02-16 Released: 2006-12-05 
• Deposition Author(s): Debler, E.W., Wilson, I.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free: 
  0.250 (Depositor), 0.220 (DCC) 
• R-Value Work: 
  0.203 (Depositor) 
• R-Value Observed: 
  0.205 (Depositor) 

Starting Model: experimental

Literature

The Effects of Antibodies on Stilbene Excited-State Energetics.

Tian, F., Debler, E.W., Millar, D.P., Deniz, A.A., Wilson, I.A., Schultz, P.G.

(2006) Angew Chem Int Ed Engl 45: 7763-7765

• PubMed: 17089439 
• DOI: https://doi.org/10.1002/anie.200602720
• Primary Citation Related Structures: 
  2G2R

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Organizational Affiliation: 
• Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, SR202, La Jolla, CA 92037, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 3 generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 4 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 96.76 kDa 
• Atom Count: 6,917 
• Modeled Residue Count: 876 
• Deposited Residue Count: 876 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Green-fluorescent antibody (11G10)-light chain	A [auth L], C [auth A]	219	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Green-fluorescent antibody (11G10)-heavy chain	B [auth H], D [auth B]	219	Mus musculus	Mutation(s): 0
UniProt
Find proteins for P84751 (Mus musculus) Explore P84751  Go to UniProtKB:  P84751

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
TNS	F [auth L], H [auth A]	N-(TRANS-4'-NITRO-4-STILBENYL)-N-METHYL-5-AMINO-PENTANOIC ACID C20 H22 N2 O4 QLLZAVDYYAQESE-AATRIKPKSA-N
SO4	E [auth L], G [auth A], I [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.75 Å
• R-Value Free:  0.250 (Depositor), 0.220 (DCC) 
• R-Value Work:  0.203 (Depositor) 
• R-Value Observed: 0.205 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 164.788	α = 90
b = 53.761	β = 94.64
c = 110.39	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-12-05 
Deposition Author(s): Debler, E.W., Wilson, I.A.

Revision History  

• Version 1.0: 2006-12-05
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2024-11-20
  Changes: Structure summary