2FJC

Crystal structure of antigen TpF1 from Treponema pallidum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of antigen TpF1 from Treponema pallidum.

Thumiger, A.Polenghi, A.Papinutto, E.Battistutta, R.Montecucco, C.Zanotti, G.

(2006) Proteins 62: 827-830


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Antigen TpF1
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
156Treponema pallidum (strain Nichols)Mutation(s): 0 
Gene Names: tpf1
Find proteins for P16665 (Treponema pallidum (strain Nichols))
Go to UniProtKB:  P16665
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FE
Query on FE

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.227 
  • Space Group: P 3 2 1
Unit Cell:
Length (Å)Angle (°)
a = 184.921α = 90.00
b = 184.921β = 90.00
c = 154.883γ = 120.00
Software Package:
Software NamePurpose
AMoREphasing
MAR345data collection
CNSrefinement
CCP4data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-01-10
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description