2F0Z

Crystal Structure of the Human Sialidase Neu2 in Complex with Zanamivir inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Human Sialidase Neu2 in Complex with Zanamivir inhibitor

Chavas, L.M.G.Kato, R.McKimm-Breschkin, J.Colman, P.M.Fusi, P.Tringali, C.Venerando, B.Tettamanti, G.Monti, E.Wakatsuki, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sialidase 2
A
382Homo sapiensGene Names: NEU2
EC: 3.2.1.18
Find proteins for Q9Y3R4 (Homo sapiens)
Go to Gene View: NEU2
Go to UniProtKB:  Q9Y3R4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZMR
Query on ZMR

Download SDF File 
Download CCD File 
A
ZANAMIVIR
MODIFIED SIALIC ACID
C12 H20 N4 O7
ARAIBEBZBOPLMB-UFGQHTETSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
ZMRIC50: 16000 - 16400 nM (99) BINDINGDB
ZMRKi: 17000 nM (99) BINDINGDB
ZMRKi: 17000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.192 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 85.510α = 90.00
b = 85.680β = 90.00
c = 92.090γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
MOLREPphasing
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-11-21
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance