2ETE

Recombinant oxalate oxidase in complex with glycolate

• PDB DOI: https://doi.org/10.2210/pdb2ETE/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Hordeum vulgare
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 2005-10-27 Released: 2005-11-22 
• Deposition Author(s): Opaleye, O., Rose, R.-S., Whittaker, M.M., Woo, E.-J., Whittaker, J.W., Pickersgill, R.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 0.194 
• R-Value Work: 0.181 
• R-Value Observed: 0.182 

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 43.15 kDa 
• Atom Count: 3,328 
• Modelled Residue Count: 402 
• Deposited Residue Count: 402 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Oxalate oxidase 1	A, B	201	Hordeum vulgare	Mutation(s): 0  EC: 1.2.3.4
UniProt
Find proteins for P45850 (Hordeum vulgare) Explore P45850  Go to UniProtKB:  P45850

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	C [auth A], F [auth B]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N
GLV	E [auth A], H [auth B]	GLYOXYLIC ACID C2 H2 O3 HHLFWLYXYJOTON-UHFFFAOYSA-N
MN	D [auth A], G [auth B]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 0.194 
• R-Value Work: 0.181 
• R-Value Observed: 0.182 
• Space Group: F 4 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 250.434	α = 90
b = 250.434	β = 90
c = 250.434	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-22 
Deposition Author(s): Opaleye, O., Rose, R.-S., Whittaker, M.M., Woo, E.-J., Whittaker, J.W., Pickersgill, R.W.

Revision History  

• Version 1.0: 2005-11-22
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.4: 2023-08-23
  Changes: Data collection, Database references, Refinement description, Structure summary