Crystal structure analysis of delta1-pyrroline-5-carboxylate dehydrogenase in ternary complex with inhibitor and NAD
Inagaki, E., Ohshima, N., Sakamoto, K., Yokoyama, S., Tahirov, T.H.To be published.
Experimental Data Snapshot
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
1-pyrroline-5-carboxylate dehydrogenase | A, B | 516 | Thermus thermophilus HB8 | Mutation(s): 0  Gene Names: TTHA1578 EC: 1.5.1.12 | ![]() |
UniProt | |||||
Find proteins for Q5SI02 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SI02  Go to UniProtKB:  Q5SI02 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SI02 | ||||
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | Ligand Interaction | ||
DPR Query on DPR | F [auth A], M [auth B] | D-PROLINE C5 H9 N O2 ONIBWKKTOPOVIA-SCSAIBSYSA-N | Ligand Interaction | ||
ACT Query on ACT | C [auth A], E [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | Ligand Interaction | ||
NA Query on NA | D [auth A], L [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.761 | α = 90 |
b = 100.761 | β = 90 |
c = 279.93 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
BSS | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
REFMAC | phasing |