2EEN | pdb_00002een

Structure of PH1819 protein from Pyrococcus Horikoshii OT3

PDB DOI: https://doi.org/10.2210/pdb2EEN/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): Pyrococcus horikoshii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-02-16 Released: 2007-08-21
Deposition Author(s): Bagautdinov, B., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.244 (Depositor), 0.246 (DCC)
R-Value Work:
0.229 (Depositor), 0.230 (DCC)

Starting Model: experimental
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This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of PH1819 protein from Pyrococcus Horikoshii OT3

Bagautdinov, B., Kunishima, N.

To be published.

Macromolecule Content

Total Structure Weight: 44.26 kDa
Atom Count: 3,290
Modeled Residue Count: 340
Deposited Residue Count: 366
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PH1819	A, B	183	Pyrococcus horikoshii	Mutation(s): 0 Gene Names: PH1819
UniProt
Find proteins for O59483 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O59483 Go to UniProtKB: O59483
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O59483
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.244 (Depositor), 0.246 (DCC)
R-Value Work: 0.229 (Depositor), 0.230 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.394	α = 90
b = 36.439	β = 91.8
c = 80.375	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-08-21

Deposition Author(s):

Bagautdinov, B.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-08-21
Type: Initial release
Version 1.1: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.2: 2023-10-25
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.