2E6X | pdb_00002e6x

X-ray structure of TT1592 from Thermus thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb2E6X/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Thermus thermophilus HB8
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-01-05 Released: 2007-12-18 
• Deposition Author(s): Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.253 (Depositor), 0.255 (DCC) 
• R-Value Work: 
  0.214 (Depositor), 0.214 (DCC) 
• R-Value Observed: 
  0.214 (Depositor) 

Literature

X-ray structure of TT1592 from Thermus thermophilus HB8

Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 33.16 kDa 
• Atom Count: 2,350 
• Modeled Residue Count: 264 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein TTHA1281	A, B, C, D	69	Thermus thermophilus HB8	Mutation(s): 0  Gene Names: tt1592
UniProt
Find proteins for Q5SIT3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SIT3  Go to UniProtKB:  Q5SIT3

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.253 (Depositor), 0.255 (DCC) 
• R-Value Work:  0.214 (Depositor), 0.214 (DCC) 
• R-Value Observed: 0.214 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.486	α = 90
b = 56.051	β = 93.48
c = 48.885	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
Rapid_auto_Sp8	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-12-18 
Deposition Author(s): Yamada, M., Nakagawa, N., Kanagawa, M., Kuramitsu, S., Kamitori, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-12-18
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary