Download MendeleyCrystal structure of project PH0182 from Pyrococcus horikoshii OT3
Shimizu, K., Kunishima, N.To be published.
2E18
Crystal structure of project PH0182 from Pyrococcus horikoshii OT3
- PDB DOI: https://doi.org/10.2210/pdb2E18/pdb
- Classification: LIGASE
- Organism(s): Pyrococcus horikoshii OT3
- Mutation(s): No
- Deposited: 2006-10-18 Released: 2007-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.262
- R-Value Work: 0.228
- R-Value Observed: 0.228
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NH(3)-dependent NAD(+) synthetase | 257 | Pyrococcus horikoshii OT3 | Mutation(s): 0 EC: 6.3.1.5 |  | |
UniProt | |||||
Find proteins for O57921 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O57921 Go to UniProtKB: O57921 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O57921 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IMD Query on IMD | G [auth A], H [auth A], I [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | ||
| ZN Query on ZN | C [auth A] D [auth A] E [auth A] F [auth A] J [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.262
- R-Value Work: 0.228
- R-Value Observed: 0.228
- Space Group: P 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.919 | α = 90 |
| b = 84.919 | β = 90 |
| c = 113.576 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2007-04-24 Deposition Author(s): Shimizu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-04-24
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
