2DX5

The complex structure between the mouse EAP45-GLUE domain and ubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.285 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain

Hirano, S.Suzuki, N.Slagsvold, T.Kawasaki, M.Trambaiolo, D.Kato, R.Stenmark, H.Wakatsuki, S.

(2006) Nat.Struct.Mol.Biol. 13: 1031-1032

  • DOI: 10.1038/nsmb1163

  • PubMed Abstract: 
  • ESCRT-II, a complex that sorts ubiquitinated membrane proteins to lysosomes, localizes to endosomes through interaction between the Vps36 subunit's GLUE domain and phosphatidylinositides (PIs). In yeast, a ubiquitin (Ub)-interacting NZF domain is ins ...

    ESCRT-II, a complex that sorts ubiquitinated membrane proteins to lysosomes, localizes to endosomes through interaction between the Vps36 subunit's GLUE domain and phosphatidylinositides (PIs). In yeast, a ubiquitin (Ub)-interacting NZF domain is inserted in Vps36 GLUE, whereas its mammalian counterpart, Eap45 GLUE, lacks the NZF domain. In the Eap45 GLUE-Ub complex structure, Ub binds far from the proposed PI-binding site of Eap45 GLUE, suggesting their independent binding.


    Organizational Affiliation

    Structural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Vacuolar protein sorting protein 36
A
139Mus musculusMutation(s): 0 
Gene Names: Vps36
Find proteins for Q91XD6 (Mus musculus)
Go to UniProtKB:  Q91XD6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
B
76Bos taurusMutation(s): 0 
Gene Names: UBC
Find proteins for P0CH28 (Bos taurus)
Go to Gene View: UBC
Go to UniProtKB:  P0CH28
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.329 
  • R-Value Work: 0.285 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 87.820α = 90.00
b = 87.820β = 90.00
c = 49.708γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
ADSCdata collection
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-10-10
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance