2DWV

Solution structure of the second WW domain from mouse salvador homolog 1 protein (mWW45)

• PDB DOI: https://doi.org/10.2210/pdb2DWV/pdb
• BMRB: 10028

• Classification: PROTEIN BINDING
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2006-08-17 Released: 2007-02-17 
• Deposition Author(s): Ohnishi, S., Kigawa, T., Koshiba, S., Tomizawa, T., Sato, M., Tochio, N., Inoue, M., Harada, T., Watanabe, S., Guntert, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Literature

Solution structure of an atypical WW domain in a novel beta-clam-like dimeric form

Ohnishi, S., Guntert, P., Koshiba, S., Tomizawa, T., Akasaka, R., Tochio, N., Sato, M., Inoue, M., Harada, T., Watanabe, S., Tanaka, A., Shirouzu, M., Kigawa, T., Yokoyama, S.

(2007) FEBS Lett 581: 462-468

• PubMed: 17239860 
• DOI: https://doi.org/10.1016/j.febslet.2007.01.008
• Primary Citation of Related Structures:  
  2DWV


• PubMed Abstract: 
  

  The WW domain is known as one of the smallest protein modules with a triple-stranded beta-sheet fold. Here, we present the solution structure of the second WW domain from the mouse salvador homolog 1 protein. This WW domain forms a homodimer with a beta-clam-like motif, as evidenced by size exclusion chromatography, analytical ultracentrifugation and NMR spectroscopy. While typical WW domains are believed to function as monomeric modules that recognize proline-rich sequences, by using conserved aromatic and hydrophobic residues that are solvent-exposed on the surface of the beta-sheet, this WW domain buries these residues in the dimer interface.

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Organizational Affiliation: 

Genomic Sciences Center, RIKEN, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.6 kDa 
• Atom Count: 748 
• Modelled Residue Count: 98 
• Deposited Residue Count: 98 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Salvador homolog 1 protein	A, B	49	Mus musculus	Mutation(s): 0  Gene Names: Sav1, Ww45, Wwp3
UniProt
Find proteins for Q8VEB2 (Mus musculus) Explore Q8VEB2  Go to UniProtKB:  Q8VEB2

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-02-17 
Deposition Author(s): Ohnishi, S., Kigawa, T., Koshiba, S., Tomizawa, T., Sato, M., Tochio, N., Inoue, M., Harada, T., Watanabe, S., Guntert, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-02-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection