2DIR

Solution structure of the THUMP domain of THUMP domain-containing protein 1

• PDB DOI: https://doi.org/10.2210/pdb2DIR/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2006-03-30 Released: 2006-09-30 
• Deposition Author(s): Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Literature

Solution structure of the THUMP domain of THUMP domain-containing protein 1

Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.76 kDa 
• Atom Count: 753 
• Modelled Residue Count: 98 
• Deposited Residue Count: 98 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
THUMP domain-containing protein 1	A	98	Homo sapiens	Mutation(s): 0  Gene Names: THUMPD1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NXG2 (Homo sapiens) Explore Q9NXG2  Go to UniProtKB:  Q9NXG2
PHAROS:  Q9NXG2 GTEx:  ENSG00000066654

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-09-30 
Deposition Author(s): Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Terada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-09-30
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations