Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate
Okazaki, S., Onda, H., Suzuki, A., Kuramitsu, S., Masui, R., Yamane, T.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
hypothetical fructokinase | 311 | Sulfurisphaera tokodaii str. 7 | Mutation(s): 0  Gene Names: kdgK, ST2478, STK_24780 EC: 2.7.1.45 | ![]() | |
UniProt | |||||
Find proteins for Q96XN9 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q96XN9  Go to UniProtKB:  Q96XN9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96XN9 | ||||
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | AA [auth B] AC [auth J] GA [auth C] GC [auth K] HB [auth G] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | Ligand Interaction | ||
CKP Query on CKP | FA [auth C] FC [auth K] GB [auth G] MA [auth D] MB [auth H] | 6-O-phosphono-beta-D-psicofuranosonic acid C6 H11 O10 P LXQWHMQOSMCJIZ-ZGEUXELVSA-N | Ligand Interaction | ||
K Query on K | EA [auth C] EC [auth K] FB [auth G] LA [auth D] LB [auth H] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | Ligand Interaction | ||
MG Query on MG | AB [auth G] BA [auth C] BB [auth G] BC [auth K] CA [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 84.638 | α = 90 |
b = 150.229 | β = 93.73 |
c = 154.757 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
MLPHARE | phasing |