2DBO

Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.230 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Crystal structure of D-Tyr-tRNA(Tyr) deacylase from Aquifex aeolicus

Ishii, T., Shibata, R., Bessho, Y., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
D-tyrosyl-tRNA(Tyr) deacylaseA148Aquifex aeolicus VF5Mutation(s): 0 
Gene Names: dtd, aq_428
EC: 3.1 (PDB Primary Data), 3.1.1.96 (UniProt)
UniProt
Find proteins for O66742 (Aquifex aeolicus (strain VF5))
Explore O66742 
Go to UniProtKB:  O66742
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO66742
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.230 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 76.01α = 90
b = 76.01β = 90
c = 133.754γ = 120
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-06-15
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Source and taxonomy, Version format compliance