2D80
Crystal structure of PHB depolymerase from Penicillium funiculosum
- PDB DOI: https://doi.org/10.2210/pdb2D80/pdb
- Classification: HYDROLASE
- Organism(s): Talaromyces funiculosus
- Mutation(s): No 
- Deposited: 2005-11-30 Released: 2006-01-31 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.204 
- R-Value Work: 0.174 
- R-Value Observed: 0.174 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PHB depolymerase | 318 | Talaromyces funiculosus | Mutation(s): 0  EC: 3.1.1.75 | ||
UniProt | |||||
Find proteins for B2NHN2 (Talaromyces funiculosus) Explore B2NHN2  Go to UniProtKB:  B2NHN2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B2NHN2 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.204 
- R-Value Work: 0.174 
- R-Value Observed: 0.174 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.507 | α = 90 |
b = 68.876 | β = 107.86 |
c = 38.733 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
SOLVE | phasing |
Entry History 
Deposition Data
- Released Date: 2006-01-31  Deposition Author(s): Hisano, T., Kasuya, K., Saito, T., Iwata, T., Miki, K.
Revision History (Full details and data files)
- Version 1.0: 2006-01-31
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary