Download MendeleyActive Center Structures of Photo-reactive Nitrile Hydratase during its Photo-activation Process
Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N.To be published.
2CZ7
Fe-type NHase photo-activated for 75min at 105K
- PDB DOI: 10.2210/pdb2CZ7/pdb
- Classification: LYASE
- Organism(s): Rhodococcus erythropolis
- Mutation(s): Yes
- Deposited: 2005-07-11 Released: 2006-01-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.153
- R-Value Work: 0.143
- R-Value Observed: 0.143
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nitrile hydratase subunit alpha | A | 206 | Rhodococcus erythropolis | Mutation(s): 2 Gene Names: nthA EC: 4.2.1.84 |  |
UniProt | |||||
Find proteins for P13448 (Rhodococcus erythropolis) Explore P13448 Go to UniProtKB: P13448 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13448 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nitrile hydratase subunit beta | B | 212 | Rhodococcus erythropolis | Mutation(s): 0 Gene Names: nthB, nha2 EC: 4.2.1.84 |  |
UniProt | |||||
Find proteins for P13449 (Rhodococcus erythropolis) Explore P13449 Go to UniProtKB: P13449 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P13449 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FE Query on FE | C [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NO Query on NO | D [auth A] | NITRIC OXIDE N O ODUCDPQEXGNKDN-UHFFFAOYAM |  | Ligand Interaction | |
| MG Query on MG | E [auth B], F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSD Query on CSD | A | L-PEPTIDE LINKING | C3 H7 N O4 S |  | CYS |
| CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.153
- R-Value Work: 0.143
- R-Value Observed: 0.143
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 114.798 | α = 90 |
| b = 60.384 | β = 124.98 |
| c = 81.804 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2006-01-11 Deposition Author(s): Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-01-11
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance
