2CZ1

photo-activation state of Fe-type NHase with n-BA in anaerobic condition


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

photo-activation state of Fe-type NHase with n-BA in anaerobic condition

Kawano, Y.Hashimoto, K.Odaka, M.Nakayama, H.Takio, K.Endo, I.Kamiya, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nitrile hydratase subunit alpha
A
206Rhodococcus erythropolisMutation(s): 0 
Gene Names: nthA
EC: 4.2.1.84
Find proteins for P13448 (Rhodococcus erythropolis)
Go to UniProtKB:  P13448
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nitrile hydratase subunit beta
B
212Rhodococcus erythropolisMutation(s): 0 
Gene Names: nthB (nha2)
EC: 4.2.1.84
Find proteins for P13449 (Rhodococcus erythropolis)
Go to UniProtKB:  P13449
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BUA
Query on BUA

Download SDF File 
Download CCD File 
A
BUTANOIC ACID
C4 H8 O2
FERIUCNNQQJTOY-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download SDF File 
Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
CSD
Query on CSD
A
L-PEPTIDE LINKINGC3 H7 N O4 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.163 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 115.329α = 90.00
b = 60.792β = 124.96
c = 82.024γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
SHELXmodel building
SCALEPACKdata scaling
SHELXL-97refinement
CNSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-01-09
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance