Download MendeleyCrystal Structure of PH0347 protein from Pyrococcus horikoshii OT3
Lokanath, N.K., Terao, Y., Kunishima, N.To be published.
2CQZ
Crystal Structure of PH0347 protein from Pyrococcus horikoshii OT3
- PDB DOI: 10.2210/pdb2CQZ/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Pyrococcus horikoshii OT3
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-05-20 Released: 2006-08-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.225
- R-Value Work: 0.195
- R-Value Observed: 0.195
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 177aa long hypothetical protein | 177 | Pyrococcus horikoshii OT3 | Mutation(s): 0 Gene Names: PH0347 EC: 3.1.3.89 |  | |
UniProt | |||||
Find proteins for O58085 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58085 Go to UniProtKB: O58085 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O58085 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.225
- R-Value Work: 0.195
- R-Value Observed: 0.195
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 78.511 | α = 90 |
| b = 101.166 | β = 119.78 |
| c = 78.646 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| EPMR | phasing |
Entry History
Deposition Data
- Released Date: 2006-08-15 Deposition Author(s): Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-08-15
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
