2C5R

The structure of phage phi29 replication organizer protein p16.7 in complex with double stranded DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.251 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis for Membrane Anchorage of Viral Phi 29 DNA During Replication.

Albert, A.Munoz-Espin, D.Jimenez, M.Asensio, J.L.Hermoso, J.A.Salas, M.Meijer, W.J.J.

(2005) J.Biol.Chem. 280: 42486

  • DOI: 10.1074/jbc.C500429200

  • PubMed Abstract: 
  • Prokaryotic DNA replication is compartmentalized at the cellular membrane. Functional and biochemical studies showed that the Bacillus subtilis phage 29-encoded membrane protein p16.7 is directly involved in the organization of membrane-associated vi ...

    Prokaryotic DNA replication is compartmentalized at the cellular membrane. Functional and biochemical studies showed that the Bacillus subtilis phage 29-encoded membrane protein p16.7 is directly involved in the organization of membrane-associated viral DNA replication. The structure of the functional domain of p16.7 in complex with DNA, presented here, reveals the multimerization mode of the protein and provides insights in the organization of the phage genome at the membrane of the infected cell.


    Organizational Affiliation

    Grupo de Cristalografía Macromolecular y Biología Estructural, Instituto de Química-Física "Rocasolano", CSIC, Serrano 119, 28006 Madrid, Spain. xalbert@iqfr.csic.es




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
EARLY PROTEIN P16.7
A, B, C, D, E, F
67Bacillus phage phi29Mutation(s): 0 
Gene Names: 16.7
Find proteins for P16517 (Bacillus phage phi29)
Go to UniProtKB:  P16517
Entity ID: 2
MoleculeChainsLengthOrganism
5'-D(*TP*CP*CP*AP*CP*CP*GP*GP)-3'Y8N/A
Entity ID: 3
MoleculeChainsLengthOrganism
5'-D(*CP*CP*GP*GP*TP*GP*GP*AP)-3'Z8N/A
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.292 
  • R-Value Work: 0.251 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 65.505α = 90.00
b = 72.111β = 90.00
c = 127.360γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
AMoREphasing
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-11-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance