Download MendeleyCrystal Structure of Human UDP-glucoronic acid decarboxylase
Ugochukwu, E., Dubinina, E., Kavanagh, K., Sundstrom, M., Weigelt, J., Edwards, A., Arrowsmith, C., von Delft, F., Oppermann, U.To be published.
2B69
Crystal Structure of Human UDP-glucoronic acid decarboxylase
- PDB DOI: https://doi.org/10.2210/pdb2B69/pdb
- Classification: LYASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2005-09-30 Released: 2005-10-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.21 Å
- R-Value Free: 0.162
- R-Value Work: 0.134
- R-Value Observed: 0.136
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-glucuronate decarboxylase 1 | A | 343 | Homo sapiens | Mutation(s): 10 Gene Names: UXS1, UNQ2538/PRO6079 EC: 4.1.1.35 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8NBZ7 (Homo sapiens) Explore Q8NBZ7 Go to UniProtKB: Q8NBZ7 | |||||
PHAROS: Q8NBZ7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NBZ7 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | B [auth A] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | Ligand Interaction | |
| UDP Query on UDP | C [auth A], D [auth A] | URIDINE-5'-DIPHOSPHATE C9 H14 N2 O12 P2 XCCTYIAWTASOJW-XVFCMESISA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.21 Å
- R-Value Free: 0.162
- R-Value Work: 0.134
- R-Value Observed: 0.136
- Space Group: P 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46 | α = 90 |
| b = 45 | β = 97 |
| c = 85 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2005-10-18 Deposition Author(s): Ugochukwu, E., Dubinina, E., Kavanagh, K., Sundstrom, M., Weigelt, J., Edwards, A., Arrowsmith, C., von Delft, F., Oppermann, U., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2005-10-18
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
