2AI0

Anti-Cocaine Antibody 7.5.21, Crystal Form III


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.222 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Flexibility of Packing: Four Crystal Forms of an Anti-Cocaine Antibody 7.5.21

Pozharski, E.Hewagama, A.Shanafelt, A.Ringe, D.Petsko, G.A.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Immunoglobulin Light Chain kappaA [auth L],
C [auth M],
E [auth N],
G [auth O]
217Mus musculusMutation(s): 0 
Entity Groups  
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Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Immunoglobulin Heavy ChainB [auth H],
D [auth I],
F [auth J],
H [auth K]
224Mus musculusMutation(s): 0 
Gene Names: Igh
UniProt
Find proteins for Q6PIP8 (Mus musculus)
Explore Q6PIP8 
Go to UniProtKB:  Q6PIP8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6PIP8
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

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AA [auth N],
BA [auth N],
CA [auth N],
EA [auth J],
FA [auth J],
AA [auth N],
BA [auth N],
CA [auth N],
EA [auth J],
FA [auth J],
GA [auth O],
HA [auth O],
I [auth L],
IA [auth O],
J [auth L],
JA [auth K],
K [auth L],
KA [auth K],
L,
LA [auth K],
MA [auth K],
O [auth H],
P [auth H],
Q [auth H],
R [auth M],
S [auth M],
T [auth M],
U [auth M],
V [auth M],
W [auth M],
X [auth I],
Y [auth I]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
DA [auth N],
M [auth L],
N [auth L],
Z [auth I]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.222 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 159.979α = 90
b = 216.355β = 90
c = 58.32γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-08-09
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description