2ACA
X-ray structure of a putative adenylate cyclase Q87NV8 from Vibrio parahaemolyticus at the 2.25 A resolution. Northeast Structural Genomics Target VpR19.
- PDB DOI: https://doi.org/10.2210/pdb2ACA/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Vibrio parahaemolyticus
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2005-07-18 Released: 2005-08-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.274 (Depositor), 0.280 (DCC) 
- R-Value Work: 0.227 (Depositor), 0.230 (DCC) 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
putative adenylate cyclase | 189 | Vibrio parahaemolyticus | Mutation(s): 6  Gene Names: VP1760 | ![]() | |
UniProt | |||||
Find proteins for Q87NV8 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87NV8  Go to UniProtKB:  Q87NV8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q87NV8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | C [auth A], D [auth A], E [auth B], F [auth B], G [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free:  0.274 (Depositor), 0.280 (DCC) 
- R-Value Work:  0.227 (Depositor), 0.230 (DCC) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 123.866 | α = 90 |
b = 41.964 | β = 125.66 |
c = 91.74 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
SOLVE | phasing |
Entry History 
Deposition Data
- Released Date: 2005-08-02  Deposition Author(s): Kuzin, A.P., Abashidze, M., Vorobiev, S.M., Forouhar, F., Chen, Y., Acton, T., Xiao, R., Conover, K., Ma, L.-C., Cunningham, K.E., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2005-08-02
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance