2A9O

Crystal structures of an activated YycF homologue, the essential response regulator from S.pneumoniae in complex with BeF3 and the effect of pH on BeF3 binding, possible phosphate in the active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structures of an activated YycF homologue, the essential response regulator from S.pneumoniae in complex with BeF3 and the effect of pH on BeF3 binding, possible phosphate in the active site.

Riboldi-Tunnicliffe, A.Isaacs, N.W.Mitchell, T.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Response regulator
A
120Streptococcus pneumoniaeMutation(s): 0 
Gene Names: 
rr02micAyycFA4260_02500A5N45_11200AZJ28_06630AZJ30_09965AZJ70_09610AZJ72_08020AZJ90_02300AZJ96_00705AZK21_10555AZK39_10500CWI64_01685ERS003549_01320ERS013923_01389ERS019159_00280ERS019166_01154ERS019258_00947ERS019260_00696ERS019367_01796ERS019420_00576ERS019499_01656ERS019561_01261ERS019595_00787ERS020087_01430ERS020408_01306ERS020474_01365ERS020524_01250ERS020598_00566ERS020671_00615ERS020873_00667ERS021072_01897ERS021243_01824ERS021280_00425ERS021431_00455ERS021752_00460ERS022223_00205ERS050341_00408ERS050419_01476ERS070137_01104ERS096107_01205ERS232442_00709ERS232443_00704ERS232469_00668ERS232484_00772ERS232512_00879ERS367973_01836ERS368006_01206ERS409062_01115ERS409277_00926ERS409331_00279FE155_01375FIU69_06800NCTC12140_02206SAMEA1026615_00815SAMEA104035118_00860SAMEA104035127_01633SAMEA104035130_01093SAMEA104035134_01661SAMEA104035136_00925SAMEA104035141_00327SAMEA104035159_00453SAMEA104035162_01660SAMEA104035170_00882SAMEA104035174_00785SAMEA104035192_01485SAMEA104035212_01473SAMEA104035216_01126SAMEA104035233_00040SAMEA104035239_01411SAMEA104035246_01954SAMEA104035281_00548SAMEA104035288_00905SAMEA104035292_00195SAMEA104035299_01753SAMEA104035301_01783SAMEA104035324_00593SAMEA104035333_01415SAMEA104035337_00195SAMEA104035342_01194SAMEA104035348_00879SAMEA104035354_01234SAMEA104035355_00408SAMEA104035370_01287SAMEA104035387_00604SAMEA104035388_01346SAMEA104035392_00927SAMEA104035396_00581SAMEA104035402_00559SAMEA104035425_00452SAMEA104035433_00093SAMEA104035469_01372SAMEA104035481_01346SAMEA104035488_01834SAMEA104035492_00496SAMEA104035495_01104SAMEA104035501_00592SAMEA104035507_01000SAMEA104035522_00048SAMEA104035539_01039SAMEA104035540_00408SAMEA104035565_00872SAMEA104035571_01179SAMEA104035575_01570SAMEA104035583_01716SAMEA104035587_00741SAMEA104035589_00003SAMEA104035596_01184SAMEA104035598_00643SAMEA104035600_01040SAMEA104035608_01040SAMEA104035615_00460SAMEA104035629_00789SAMEA104035640_00131SAMEA104035656_00536SAMEA104035670_01246SAMEA104035677_00031SAMEA104035695_00568SAMEA104035730_00955SAMEA104035731_00222SAMEA104035737_01080SAMEA104035741_01578SAMEA104035748_01643SAMEA104035749_00453SAMEA104035771_00294SAMEA104035776_01557SAMEA104035779_01252SAMEA104035794_01327SAMEA104035801_01147SAMEA104035805_00941SAMEA104035806_00331SAMEA104035820_00763SAMEA104035826_00553SAMEA104035832_01769SAMEA104035833_00772SAMEA104035838_00497SAMEA104035871_00079SAMEA104035875_01041SAMEA104035881_00294SAMEA104035904_00366SAMEA104035937_00247SAMEA104035941_00221SAMEA104035958_00918SAMEA104035962_00467SAMEA104038609_00834SAMEA104038619_01804SAMEA104154639_01725SAMEA104154643_00816SAMEA104154644_00375SAMEA104154666_01612SAMEA104154673_01770SAMEA104154682_01764SAMEA104154716_00646SAMEA104154732_00814SAMEA104154746_01346SAMEA104154747_01457SAMEA104154750_01543SAMEA104154755_00595SAMEA104154769_01542SAMEA104154791_00337SAMEA104154797_01137SAMEA104154804_00256SAMEA104154820_01561SAMEA104154833_00242SAMEA104154907_01929SAMEA104154921_00490SAMEA104154951_01666SAMEA104154953_00485SAMEA104154959_01325SAMEA104154962_00561SAMEA104154966_00654SAMEA104154975_00648SAMEA104154990_01725SAMEA104155025_01498SAMEA104155030_01567SAMEA104155035_01160SAMEA104155056_00366SAMEA104155079_01361SAMEA104155081_01425SAMEA104155086_00189SAMEA104155094_01762SAMEA104155097_00031SAMEA104155125_01473SAMEA1963824_00658SAMEA1968537_01585SAMEA2049997_00328SAMEA2050136_00460SAMEA2050148_00359SAMEA2050151_01131SAMEA2050264_00527SAMEA2050267_01554SAMEA2050274_00690SAMEA2050326_01229SAMEA2050327_00955SAMEA2050330_00312SAMEA2050506_00640SAMEA2050605_01171SAMEA2050613_01051SAMEA2050716_01396SAMEA2050725_00243SAMEA2050726_01699SAMEA2050856_00202SAMEA2051750_01281SAMEA2052026_01254SAMEA2052144_00589SAMEA2052380_01363SAMEA2052382_01031SAMEA2052387_00128SAMEA2052486_00139SAMEA2052493_01679SAMEA2052498_00787SAMEA2066126_02145SAMEA2066286_00694SAMEA2066289_00517SAMEA2066834_00719SAMEA2066839_00046SAMEA2203858_01447SAMEA2203862_00590SAMEA2204024_01206SAMEA2335963_00696SAMEA2335968_01625SAMEA2335976_00253SAMEA2341322_00698SAMEA2521606_01199SAMEA2521861_00470SAMEA2627268_02151SAMEA2658279_01020SAMEA2696310_01491SAMEA2696394_01044SAMEA2696492_00266SAMEA2696596_00074SAMEA2796704_01605SAMEA2796717_00746SAMEA2796719_00774SAMEA2814217_00030SAMEA3171064_01589SAMEA3172940_01251SAMEA3173021_00393SAMEA3207192_01478SAMEA3207204_00573SAMEA3232645_01740SAMEA3232670_00956SAMEA3309623_00710SAMEA3309764_01283SAMEA3309765_01727SAMEA3309776_01632SAMEA3309788_00705SAMEA3309804_00197SAMEA3309809_01684SAMEA3353169_00465SAMEA3353177_01303SAMEA3353181_01597SAMEA3353182_00029SAMEA3353184_00763SAMEA3353191_01589SAMEA3353204_01511SAMEA3353244_01657SAMEA3353256_01787SAMEA3353291_01748SAMEA3353313_01234SAMEA3353371_01861SAMEA3353401_01975SAMEA3353409_01788SAMEA3353424_00479SAMEA3353431_00384SAMEA3353434_01242SAMEA3353477_01402SAMEA3353492_00558SAMEA3353544_01856SAMEA3353605_01354SAMEA3353631_00386SAMEA3353696_01247SAMEA3353879_01454SAMEA3353919_01049SAMEA3353949_00198SAMEA3353958_01337SAMEA3353966_01620SAMEA3353994_01458SAMEA3354015_00047SAMEA3354066_00380SAMEA3354091_01860SAMEA3354108_01921SAMEA3354153_00493SAMEA3354213_01164SAMEA3354214_01350SAMEA3354222_00474SAMEA3354227_00587SAMEA3354229_00990SAMEA3354265_00343SAMEA3354309_00845SAMEA3354320_00498SAMEA3354327_01004SAMEA3354336_01633SAMEA3354337_01126SAMEA3354358_01247SAMEA3354371_01540SAMEA3381357_01358SAMEA3381367_01668SAMEA3381385_00622SAMEA3381395_00616SAMEA3381516_00801SAMEA3381527_02234SAMEA3381574_00592SAMEA3381596_01023SAMEA3381605_02035SAMEA3381629_00126SAMEA3381631_00754SAMEA3381647_01648SAMEA3381676_00973SAMEA3388893_00858SAMEA3388934_01208SAMEA3389167_01261SAMEA3389170_01442SAMEA3389186_00274SAMEA3389217_02078SAMEA3389227_01588SAMEA3389245_00424SAMEA3389256_00993SAMEA3389276_00342SAMEA3389292_01779SAMEA3389338_01764SAMEA3389344_01150SAMEA3389387_00414SAMEA3389661_01072SAMEA3389675_00141SAMEA3389682_00598SAMEA3389703_00267SAMEA3389718_00775SAMEA3389769_00493SAMEA3389771_00232SAMEA3389775_00903SAMEA3389799_00495SAMEA3389812_00377SAMEA3389839_01204SAMEA3389847_00370SAMEA3389877_01101SAMEA3389894_00585SAMEA3389944_00742SAMEA3389956_01547SAMEA3389964_01781SAMEA3390000_00390SAMEA3390015_00675SAMEA3390019_02016SAMEA3390021_01662SAMEA3390023_00621SAMEA3390041_01201SAMEA3390054_01110SAMEA3390064_01385SAMEA3390076_00917SAMEA3430861_00598SAMEA3431310_01120SAMEA3431333_00031SAMEA3431335_01600SAMEA3431355_01034SAMEA3431359_02182SAMEA3431383_01445SAMEA3431392_01207SAMEA3431404_01431SAMEA3431415_01720SAMEA3431424_00486SAMEA3431428_01613SAMEA3431481_01788SAMEA3431514_01711SAMEA3431586_00245SAMEA3431589_00245SAMEA3431610_01201SAMEA3447936_00955SAMEA3447937_02036SAMEA3447943_01215SAMEA3447953_00553SAMEA3447959_00570SAMEA3448005_00439SAMEA3448016_01702SAMEA3506047_00961SAMEA3506052_00657SAMEA3713874_00440SAMEA3713880_00343SAMEA3713882_01316SAMEA3713897_01696SAMEA3713924_01696SAMEA3713985_00798SAMEA3714007_00372SAMEA3714042_00532SAMEA3714077_00957SAMEA3714088_00629SAMEA3714166_00377SAMEA3714170_01995SAMEA3714180_00437SAMEA3714190_00762SAMEA3714202_01670SAMEA3714216_00388SAMEA3714239_01523SAMEA3714249_00568SAMEA3714261_01779SAMEA3714263_00572SAMEA3714267_00179SAMEA3714270_01064SAMEA3714281_00652SAMEA3714312_01914SAMEA3714340_01901SAMEA3714341_00800SAMEA3714392_01132SAMEA3714416_01681SAMEA3714435_01650SAMEA3714441_00555SAMEA3714494_00442SAMEA3714506_00661SAMEA3714510_01381SAMEA3714516_01067SAMEA4034875_02178SAMEA4034884_00433SAMEA4036443_00192SAMEA4038883_00397SAMEA4387959_00939SAMEA4387966_00652SAMEA4387970_00490SAMEA4387980_00953SAMEA4387985_00653SAMEA4388025_00595SAMEA4388029_00622SAMEA4388030_01075SAMEA4388031_00735SAMEA4388039_00045SAMEA4388087_00003SAMEA4388094_00466SAMEA4388095_01033SAMEA4388129_00248SAMEA4388135_00360SAMEA4388191_02004SAMEA4388199_01952SAMEA4388249_01589SAMEA4388262_00646SAMEA4388285_00650SAMEA4388317_01441SAMEA4388349_01329SAMEA4388359_01299SAMEA4388393_01399SAMEA4388407_00373SAMEA4388421_01051SAMEA4392455_01411SAMEA4392457_00879SAMEA4707835_00866SAMEA4707851_01771SAMEA4707852_01667SAMEA4707854_01372SAMEA4707864_01168SAMEA4707870_01525SAMEA4707882_01509SAMEA4707887_00501SAMEA4707892_01180SAMEA4732910_01057SAMEA4732921_00046SAMEA4732922_01999SAMEA4732961_01592SpnNT_01081

Find proteins for Q9S1K0 (Streptococcus pneumoniae)
Go to UniProtKB:  Q9S1K0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
BEF
Query on BEF

Download CCD File 
A
BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
 Ligand Interaction
MN
Query on MN

Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.563α = 90
b = 93.324β = 90
c = 37.456γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-09-26
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance