Macromolecule Content

Total Structure Weight: 12.81 kDa
Atom Count: 1,066
Modelled Residue Count: 116
Deposited Residue Count: 116
Unique protein chains: 1

1ZUY

High-resolution structure of yeast Myo5 SH3 domain

PDB DOI: https://doi.org/10.2210/pdb1ZUY/pdb

Classification: CONTRACTILE PROTEIN
Organism(s): Saccharomyces cerevisiae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2005-06-01 Released: 2006-10-24
Deposition Author(s): Wilmanns, M., Kursula, P., Gonfloni, S., Ferracuti, S., Cesareni, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.39 Å
R-Value Free: 0.206
R-Value Work: 0.166
R-Value Observed: 0.168

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

High-resolution structure of yeast Myo5 SH3 domain

Wilmanns, M., Kursula, P., Gonfloni, S., Ferracuti, S., Cesareni, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myosin-5 isoform	A, B	58	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for Q04439 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04439 Go to UniProtKB: Q04439
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q04439
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IPA Query on IPA Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	ISOPROPYL ALCOHOL C₃ H₈ O KFZMGEQAYNKOFK-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.39 Å
R-Value Free: 0.206
R-Value Work: 0.166
R-Value Observed: 0.168
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 27.06	α = 90
b = 42.25	β = 90
c = 90.91	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MAR345	data collection
XDS	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2006-10-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2006-10-24
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.