Download MendeleyStructural Analysis of Leishmania major ubiquitin conjugating enzyme E2
Bosch, J., Hol, W.G.J.To be published.
1YF9
Structural analysis of Leishmania major ubiquitin conjugating enzyme E2
- PDB DOI: 10.2210/pdb1YF9/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Leishmania major
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-12-31 Released: 2005-02-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210
- R-Value Work: 0.185
- R-Value Observed: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin carrier protein 4 | A, B, C | 171 | Leishmania major | Mutation(s): 0 Gene Names: LMJF_32_0700 EC: 6.3.2.19 |  |
UniProt | |||||
Find proteins for Q4Q5L3 (Leishmania major) Explore Q4Q5L3 Go to UniProtKB: Q4Q5L3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4Q5L3 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | D [auth A], E [auth A], F [auth B], G [auth B], H [auth C], | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.210
- R-Value Work: 0.185
- R-Value Observed: 0.186
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 114.448 | α = 90 |
| b = 114.448 | β = 90 |
| c = 139.547 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| SHELXS | phasing |
Entry History
Deposition Data
- Released Date: 2005-02-22 Deposition Author(s): Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2005-02-22
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
