1Y43

crystal structure of aspergilloglutamic peptidase from Aspergillus niger


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger

Sasaki, H.Nakagawa, A.Muramatsu, T.Suganuma, M.Sawano, Y.Kojima, M.Kubota, K.Takahashi, K.Tanokura, M.

(2004) Proc.Jpn.Acad.,Ser.B 80: 435-438


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aspergillopepsin II light chain
A
39Aspergillus nigerMutation(s): 0 
EC: 3.4.23.19
Find proteins for P24665 (Aspergillus niger)
Go to UniProtKB:  P24665
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Aspergillopepsin II heavy chain
B
173Aspergillus nigerMutation(s): 0 
EC: 3.4.23.19
Find proteins for P24665 (Aspergillus niger)
Go to UniProtKB:  P24665
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 55.100α = 90.00
b = 70.700β = 90.00
c = 38.300γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
DENZOdata reduction
MLPHAREphasing
CCP4data scaling
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-12-13
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2013-02-27
    Type: Database references