Macromolecule Content

Total Structure Weight: 64.03 kDa
Atom Count: 5701
Modelled Residue Count: 568
Deposited Residue Count: 571
Unique protein chains: 1

1Y0P

Flavocytochrome c3 with mesaconate bound

DOI: 10.2210/pdb1Y0P/pdb

Classification: OXIDOREDUCTASE
Organism(s): Shewanella frigidimarina
Expression System: Shewanella frigidimarina
Mutation(s): No

Deposited: 2004-11-16 Released: 2005-11-08
Deposition Author(s): Mowat, C.G., Wardrope, C., Reid, G.A., Chapman, S.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.184
R-Value Work: 0.151
R-Value Observed: 0.152

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Electrocatalytic Generation of Chiral Fumarate Derivatives by Flavocytochrome c3

Wardrope, C., Mowat, C.G., Reid, G.A., Chapman, S.K.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fumarate reductase flavoprotein subunit	A	571	Shewanella frigidimarina	Mutation(s): 0 Gene Names: fccA, fcc3 EC: 1.3.99.1 (PDB Primary Data), 1.3.5.4 (UniProt)
Find proteins for P0C278 (Shewanella frigidimarina) Explore P0C278 Go to UniProtKB: P0C278
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD Query on FAD Download Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A]	G [auth A]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Ligand Interaction
HEM Query on HEM Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain F [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A]	C [auth A], D [auth A], E [auth A], F [auth A]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Ligand Interaction
MEZ Query on MEZ Download Ideal Coordinates CCD File SDF format, chain H [auth A] MOL2 format, chain H [auth A]	H [auth A]	(2E)-2-METHYLBUT-2-ENEDIOIC ACID C₅ H₆ O₄ HNEGQIOMVPPMNR-NSCUHMNNSA-N		Ligand Interaction
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A]	B [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.184
R-Value Work: 0.151
R-Value Observed: 0.152
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.449	α = 90
b = 91.687	β = 91.13
c = 78.287	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2004-11-16
Released Date: 2005-11-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-11-08
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.