1X6I

Crystal structure of ygfY from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation

Lim, K.Doseeva, V.Sarikaya Demirkan, E.Pullalarevu, S.Krajewski, W.Galkin, A.Howard, A.Herzberg, O.

(2005) Proteins 58: 759-763


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypothetical protein ygfY
A, B
91Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: sdhE (cptB, ygfY)
Find proteins for P64559 (Escherichia coli (strain K12))
Go to UniProtKB:  P64559
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.171 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 43.500α = 90.00
b = 87.100β = 90.00
c = 40.800γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
MLPHAREphasing
CrystalCleardata scaling
RESOLVEphasing
RESOLVEmodel building
HKL-2000data collection
HKL-2000data reduction
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-02-08
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2019-07-24
    Type: Data collection, Refinement description
  • Version 1.4: 2019-08-14
    Type: Data collection