Download MendeleyStructure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato
Imamura, K., Matsuura, T., Takaha, T., Fujii, K., Nakagawa, A., Kusunoki, M., Nitta, Y.To be published.
1X1N
Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato
- PDB DOI: https://doi.org/10.2210/pdb1X1N/pdb
- Classification: TRANSFERASE
- Organism(s): Solanum tuberosum
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-04-08 Released: 2006-04-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.210
- R-Value Work: 0.179
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 7COV
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4-alpha-glucanotransferase | 524 | Solanum tuberosum | Mutation(s): 0 Gene Names: DPEP EC: 2.4.1.25 |  | |
UniProt | |||||
Find proteins for Q06801 (Solanum tuberosum) Explore Q06801 Go to UniProtKB: Q06801 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q06801 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.210
- R-Value Work: 0.179
- R-Value Observed: 0.181
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 69.869 | α = 90 |
| b = 120.535 | β = 90 |
| c = 174.382 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-04-18 Deposition Author(s): Imamura, K., Matsuura, T., Takaha, T., Fujii, K., Nakagawa, A., Kusunoki, M., Nitta, Y.
Revision History (Full details and data files)
- Version 1.0: 2006-04-18
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
