Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3
Mizutani, H., Kunishima, N.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
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Molecule | Chains | Sequence Length | Organism | Details |
Xaa-Pro dipeptidase | A, B | 351 | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | Mutation(s): 0  Gene Names: pepQ EC: 3.4.13.9 |
Find proteins for O58885 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB:  O58885 |
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | A, B | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | ![]() |  Ligand Interaction | |
CAC Query on CAC | A, B | CACODYLATE ION dimethylarsinate C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M | ![]() |  Ligand Interaction |
Length (Å) | Angle (°) |
---|---|
a = 66.697 | α = 90.00 |
b = 105.876 | β = 90.00 |
c = 106.291 | γ = 90.00 |
Software Name | Purpose |
---|---|
HKL-2000 | data reduction |
SCALEPACK | data scaling |
MOLREP | phasing |
CNS | refinement |