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Download EndnoteCrystal Structure of the Prolidase from Pyrococcus horikoshii OT3
Mizutani, H., Kunishima, N.To be published.
1WY2
Crystal Structure of the Prolidase from Pyrococcus horikoshii OT3
- DOI: 10.2210/pdb1WY2/pdb
- Classification: HYDROLASE
- Organism(s): Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
- Expression System: Escherichia coli
- Deposited: 2005-02-04 Released: 2005-02-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.210
- R-Value Work: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Xaa-Pro dipeptidase | A, B | 351 | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | Mutation(s): 0 Gene Names: pepQ EC: 3.4.13.9 |
Find proteins for O58885 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Go to UniProtKB: O58885 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A, B | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| CAC Query on CAC | A, B | CACODYLATE ION dimethylarsinate C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.7 Å
- R-Value Free: 0.210
- R-Value Work: 0.187
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 66.697 | α = 90.00 |
| b = 105.876 | β = 90.00 |
| c = 106.291 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Deposited Date: 2005-02-04
- Released Date: 2005-02-22
- Deposition Author(s): Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
