1WE0

Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.208 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of decameric peroxiredoxin (AhpC) from Amphibacillus xylanus

Kitano, K.Kita, A.Hakoshima, T.Niimura, Y.Miki, K.

(2005) Proteins 59: 644-647


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
alkyl hydroperoxide reductase CABCDEFGHABCDEFGHIJ
187Amphibacillus xylanusMutation(s): 0 
EC: 1.11.1 (PDB Primary Data), 1.11.1.26 (UniProt)
Find proteins for K0J4Q8 (Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01))
Explore K0J4Q8 
Go to UniProtKB:  K0J4Q8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NH4
Query on NH4

Download Ideal Coordinates CCD File 
F, J
AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.208 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.216α = 77.22
b = 79.319β = 82.33
c = 104.449γ = 80.08
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CNSrefinement
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-03-29
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2018-02-07
    Changes: Experimental preparation