1W8I

The Structure of gene product af1683 from Archaeoglobus fulgidus.

• PDB DOI: https://doi.org/10.2210/pdb1W8I/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Archaeoglobus fulgidus DSM 4304
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-09-22 Released: 2004-11-16 
• Deposition Author(s): Midwest Center for Structural Genomics (MCSG), Cuff, M.E., Zhang, R., Ginell, S.L., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.225 
• R-Value Work: 0.211 
• R-Value Observed: 0.212 

Literature

The Structure of Gene Product Af1683 from Archaeoglobus Fulgidus

Cuff, M.E., Zhang, R., Ginell, S.L., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 17.96 kDa 
• Atom Count: 1,399 
• Modelled Residue Count: 155 
• Deposited Residue Count: 156 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PUTATIVE VAPC RIBONUCLEASE AF_1683	A	156	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0  EC: 3.1
UniProt
Find proteins for O28590 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28590  Go to UniProtKB:  O28590

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.225 
• R-Value Work: 0.211 
• R-Value Observed: 0.212 
• Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.73	α = 90
b = 66.73	β = 90
c = 181.381	γ = 120

Software Package:

Software Name	Purpose
DM	model building
HKL-2000	data reduction
HKL-3000	phasing
SHELXD	phasing
MLPHARE	phasing
DM	phasing
RESOLVE	phasing
ARP/wARP	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-16 
Deposition Author(s): Midwest Center for Structural Genomics (MCSG), Cuff, M.E., Zhang, R., Ginell, S.L., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.

Revision History  

• Version 1.0: 2004-11-16
  Type: Initial release
  
• Version 1.1: 2012-02-22
  Changes: Database references, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance
• Version 1.2: 2017-05-24
  Changes: Database references
• Version 1.3: 2017-06-28
  Changes: Refinement description