Download MendeleyCrystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VMD
Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1VMD/pdb
- Classification: LYASE
- Organism(s): Thermotoga maritima
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-09-20 Released: 2004-09-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.219
- R-Value Work: 0.167
- R-Value Observed: 0.170
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Methylglyoxal synthase | A, B | 178 | Thermotoga maritima | Mutation(s): 0 Gene Names: mgsA, TM1185 EC: 4.2.3.3 |  |
UniProt | |||||
Find proteins for Q9X0R7 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0R7 Go to UniProtKB: Q9X0R7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X0R7 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| CL Query on CL | D [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.06 Å
- R-Value Free: 0.219
- R-Value Work: 0.167
- R-Value Observed: 0.170
- Space Group: I 2 3
- Diffraction Data: https://doi.org/10.18430/M31VMD
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 130.243 | α = 90 |
| b = 130.243 | β = 90 |
| c = 130.243 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2004-09-28 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-09-28
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Derived calculations, Version format compliance
