Macromolecule Content

Total Structure Weight: 37.64 kDa
Atom Count: 2748
Residue Count: 305
Unique protein chains: 1

1VHN

Crystal structure of a putative flavin oxidoreductase with flavin

DOI: 10.2210/pdb1VHN/pdb

Classification: Structural genomics, unknown function
Organism(s): Thermotoga maritima
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2003-12-01 Released: 2003-12-30
Deposition Author(s): Structural GenomiX

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.227
R-Value Work: 0.189

wwPDB Validation3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The 1.59 A resolution crystal structure of TM0096, a flavin mononucleotide binding protein from Thermotoga maritima.

Park, F., Gajiwala, K., Noland, B., Wu, L., He, D., Molinari, J., Loomis, K., Pagarigan, B., Kearins, P., Christopher, J., Peat, T., Badger, J., Hendle, J., Lin, J., Buchanan, S.

(2004) Proteins 55: 772-774

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
putative flavin oxidoreductase	A	318	Thermotoga maritima	Mutation(s): 7 Gene Names: yacF EC: 1.3.1
Find proteins for Q9WXV1 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Go to UniProtKB: Q9WXV1
Protein Feature View
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FMN Query on FMN Download CCD File	A	FLAVIN MONONUCLEOTIDE C₁₇ H₂₁ N₄ O₉ P FVTCRASFADXXNN-SCRDCRAPSA-N		Ligand Interaction
SO4 Query on SO4 Download CCD File	A	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.59 Å
R-Value Free: 0.227
R-Value Work: 0.189
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.279	α = 90
b = 96.442	β = 90
c = 93.139	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
TRUNCATE	data reduction
REFMAC	refinement
CCP4	data scaling
TRUNCATE	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2003-12-01
Released Date: 2003-12-30

Deposition Author(s):

Structural GenomiX

Revision History

Version 1.0: 2003-12-30
Type: Initial release
Version 1.1: 2008-04-26
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2017-10-04
Changes: Refinement description

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.