1VEE

NMR structure of the hypothetical rhodanese domain At4g01050 from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Solution structure of the rhodanese homology domain At4g01050(175-295) from Arabidopsis thaliana

Pantoja-Uceda, D.Lopez-Mendez, B.Koshiba, S.Inoue, M.Kigawa, T.Terada, T.Shirouzu, M.Tanaka, A.Seki, M.Shinozaki, K.Yokoyama, S.Guntert, P.

(2005) Protein Sci 14: 224-230

  • DOI: 10.1110/ps.041138705
  • Primary Citation of Related Structures:  
    1VEE

  • PubMed Abstract: 
  • The three-dimensional structure of the rhodanese homology domain At4g01050(175-195) from Arabidopsis thaliana has been determined by solution nuclear magnetic resonance methods based on 3043 upper distance limits derived from NOE intensities measured in three-dimensional NOESY spectra ...

    The three-dimensional structure of the rhodanese homology domain At4g01050(175-195) from Arabidopsis thaliana has been determined by solution nuclear magnetic resonance methods based on 3043 upper distance limits derived from NOE intensities measured in three-dimensional NOESY spectra. The structure shows a backbone root mean square deviation to the mean coordinates of 0.43 A for the structured residues 7-125. The fold consists of a central parallel beta-sheet with five strands in the order 1-5-4-2-3 and arranged in the conventional counterclockwise twist, and helices packing against each side of the beta-sheet. Comparison with the sequences of other proteins with a rhodanese homology domain in Arabidopsis thaliana indicated residues that could play an important role in the scaffold of the rhodanese homology domain. Finally, a three-dimensional structure comparison of the present noncatalytic rhodanese homology domain with the noncatalytic rhodanese domains of sulfurtransferases from other organisms discloses differences in the length and conformation of loops that could throw light on the role of the noncatalytic rhodanese domain in sulfurtransferases.


    Related Citations: 
    • NMR Assignment of the Hypothetical Rhodanese Domain At4g01050 from Arabidopsis Thaliana
      Pantoja-Uceda, D., Lopez-Mendez, B., Koshiba, S., Kigawa, T., Shirouzu, M., Terada, T., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Hirota, H., Yoshida, M., Tanaka, A., Osanai, T., Seki, M., Shinozaki, K., Yokoyama, S., Guntert, P.
      (2004) J Biomol NMR 29: 207

    Organizational Affiliation

    Tatsuo Miyazawa Memorial Program, Japan.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
proline-rich protein familyA134Arabidopsis thalianaMutation(s): 0 
Gene Names: RIKEN CDNA RAFL06-68-J04STR4TROLAt4g01050F2N1.31
Find proteins for Q9M158 (Arabidopsis thaliana)
Explore Q9M158 
Go to UniProtKB:  Q9M158
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 
  • OLDERADO: 1VEE Olderado

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2005-01-25
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance