1VD6

Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.217 

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This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase complexed with Glycerol

Ishijima, J.Yutani, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Glycerophosphoryl Diester PhosphodiesteraseA224Thermus thermophilus HB8Mutation(s): 0 
Gene Names: TTHB141
EC: 3.1.4.46
UniProt
Find proteins for Q53W25 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
Explore Q53W25 
Go to UniProtKB:  Q53W25
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.217 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.194α = 90
b = 74.194β = 90
c = 73.439γ = 120
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data reduction
SCALEPACKdata scaling
CNSphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-04-05
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Source and taxonomy, Version format compliance