1VD0

Capsid stabilizing protein GPD, NMR, 20 Structures

• PDB DOI: https://doi.org/10.2210/pdb1VD0/pdb
• BMRB: 5807

• Classification: VIRAL PROTEIN
• Organism(s): Lambdavirus lambda
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-03-17 Released: 2005-03-29 
• Deposition Author(s): Iwai, H., Forrer, P., Pluckthun, A., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Literature

NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD.

Iwai, H., Forrer, P., Pluckthun, A., Guntert, P.

(2005) J Biomol NMR 31: 351-356

• PubMed: 15929002 
• DOI: https://doi.org/10.1007/s10858-005-0945-7
• Primary Citation of Related Structures:  
  1VD0

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Organizational Affiliation: 

Tatsuo Miyazawa Memorial Program, RIKEN Genomic Sciences Center, Tsurumi, Yokohama, Japan. [e-mail]

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 11.45 kDa 
• Atom Count: 805 
• Modelled Residue Count: 109 
• Deposited Residue Count: 109 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Head decoration protein	A	109	Lambdavirus lambda	Mutation(s): 0
UniProt
Find proteins for P03712 (Escherichia phage lambda) Explore P03712  Go to UniProtKB:  P03712

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-03-29 
Deposition Author(s): Iwai, H., Forrer, P., Pluckthun, A., Guntert, P., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-03-29
  Type: Initial release
  
• Version 1.1: 2007-10-05
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 2.0: 2022-03-02
  Changes: Atomic model, Data collection, Database references, Derived calculations
• Version 2.1: 2023-12-27
  Changes: Data collection