Download MendeleyStructural Basis for Thermostability of Pectate Lyase from Bacillus sp. TS 47
Nakaniwa, T., Tada, T., Yamaguchi, A., Kitatani, T., Takao, M., Sakai, T., Nishimura, K.To be published.
1VBL
Structure of the thermostable pectate lyase PL 47
- PDB DOI: 10.2210/pdb1VBL/pdb
- Classification: LYASE
- Organism(s): Bacillus sp. TS-47
- Expression System: Bacillus subtilis
- Mutation(s): No
- Deposited: 2004-02-27 Released: 2005-04-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.209
- R-Value Work: 0.182
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| pectate lyase 47 | A | 416 | Bacillus sp. TS-47 | Mutation(s): 0 Gene Names: pl47 EC: 4.2.2.2 |  |
UniProt | |||||
Find proteins for Q9AJM4 (Bacillus sp. TS-47) Explore Q9AJM4 Go to UniProtKB: Q9AJM4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9AJM4 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | B [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.209
- R-Value Work: 0.182
- R-Value Observed: 0.182
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.61 | α = 90 |
| b = 58.61 | β = 90 |
| c = 229.42 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| AMoRE | phasing |
| CNS | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2005-04-19 Deposition Author(s): Nakaniwa, T., Tada, T., Yamaguchi, A., Kitatani, T., Takao, M., Sakai, T., Nishimura, K.
Revision History (Full details and data files)
- Version 1.0: 2005-04-19
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2014-04-23
Changes: Experimental preparation
