1V5Z

Binding of coumarins to NAD(P)H:FMN oxidoreductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Binding of coumarins to NAD(P)H:FMN oxidoreductase

Kobori, T.Koike, H.Sasaki, H.Zenno, S.Saigo, K.Tanokura, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Major NAD(P)H-flavin oxidoreductaseA, B217Aliivibrio fischeriMutation(s): 0 
Gene Names: FRaseI
EC: 1.6.99
UniProt
Find proteins for P46072 (Aliivibrio fischeri)
Explore P46072 
Go to UniProtKB:  P46072
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN (Subject of Investigation/LOI)
Query on FMN

Download Ideal Coordinates CCD File 
C [auth A], E [auth B]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
2HC (Subject of Investigation/LOI)
Query on 2HC

Download Ideal Coordinates CCD File 
D [auth A], F [auth B](2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID
C9 H8 O3
PMOWTIHVNWZYFI-AATRIKPKSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.201 
  • R-Value Observed: 0.201 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.6α = 90
b = 63.3β = 100
c = 74.4γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
DMmodel building
X-PLORrefinement
DMphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-03-08
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance