Download MendeleyCrystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans
Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.To be published.
1V5E
Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans
- PDB DOI: 10.2210/pdb1V5E/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aerococcus viridans
- Mutation(s): No
- Deposited: 2003-11-22 Released: 2005-06-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.250
- R-Value Work: 0.231
- R-Value Observed: 0.231
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pyruvate oxidase | A | 590 | Aerococcus viridans | Mutation(s): 0 EC: 1.2.3.3 |  |
UniProt | |||||
Find proteins for A9X9K8 (Aerococcus viridans) Explore A9X9K8 Go to UniProtKB: A9X9K8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9X9K8 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | F [auth A] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | Ligand Interaction | |
| SO4 Query on SO4 | B [auth A], C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.250
- R-Value Work: 0.231
- R-Value Observed: 0.231
- Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.66 | α = 90 |
| b = 106.12 | β = 90 |
| c = 155.3 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2005-06-28 Deposition Author(s): Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.
Revision History (Full details and data files)
- Version 1.0: 2005-06-28
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
