1UPR

Crystal structure of the PEPP1 pleckstrin homology domain in complex with Inositol 1,3,4,5-tetrakisphosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of the Pleckstrin Homology Domain of Pepp1

Milburn, C.C.Komander, D.Deak, M.Alessi, D.R.Van Aalten, D.M.F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 4
A
123Homo sapiensMutation(s): 0 
Gene Names: PLEKHA4 (PEPP1)
Find proteins for Q9H4M7 (Homo sapiens)
Go to Gene View: PLEKHA4
Go to UniProtKB:  Q9H4M7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4IP
Query on 4IP

Download SDF File 
Download CCD File 
A
INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE
C6 H16 O18 P4
CIPFCGZLFXVXBG-CNWJWELYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.237 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 92.577α = 90.00
b = 92.577β = 90.00
c = 35.571γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-10-20
    Type: Initial release
  • Version 1.1: 2012-05-16
    Type: Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance
  • Version 1.2: 2016-12-07
    Type: Database references