1UD7

SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7

• PDB DOI:  https://doi.org/10.2210/pdb1UD7/pdb
• BMRB: 4493

• Classification: UBIQUITIN
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 1999-04-07 Released: 1999-05-06 
• Deposition Author(s): Johnson, E.C., Lazar, G.A., Desjarlais, J.R., Handel, T.M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 20 
• Selection Criteria: LOWEST ENERGY 

Literature

Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin.

Johnson, E.C., Lazar, G.A., Desjarlais, J.R., Handel, T.M.

(1999) Structure 7: 967-976

• PubMed: 10467150 
• DOI: https://doi.org/10.1016/s0969-2126(99)80123-3
• Primary Citation of Related Structures:  
  1UD7


• PubMed Abstract: 
  

The recent merger of computation and protein design has resulted in a burst of success in the generation of novel proteins with native-like properties. A critical component of this coupling between theory and experiment is a detailed analysis of the structures and stabilities of designed proteins to assess and improve the accuracy of design algorithms.

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Organizational Affiliation: 

Department of Physics, University of California, Berkeley 94720, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.6 kDa 
• Atom Count: 604 
• Modelled Residue Count: 76 
• Deposited Residue Count: 76 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN (UBIQUITIN CORE MUTANT 1D7)	A	76	N/A	Mutation(s): 7
UniProt & NIH Common Fund Data Resources
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48  Go to UniProtKB:  P0CG48
PHAROS:  P0CG48

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 40 
• Conformers Submitted: 20 
• Selection Criteria: LOWEST ENERGY 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1999-05-06 
Deposition Author(s): Johnson, E.C., Lazar, G.A., Desjarlais, J.R., Handel, T.M.

Revision History  

• Version 1.0: 1999-05-06
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2021-11-03
  Changes: Database references, Derived calculations