1UBF

MsREcA-ATPgS complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structures of Mycobacterium smegmatis RecA and Its Nucleotide Complexes

Datta, S.Krishna, R.Ganesh, N.Chandra, N.R.Muniyappa, K.Vijayan, M.

(2003) J.BACTERIOL. 185: 4280-4284

  • DOI: 10.1128/jb.185.14.4280-4284.2003
  • Primary Citation of Related Structures:  
  • Also Cited By: 2ODN, 4PTL, 4PSV, 4PSK, 4PSA, 4PR0, 4PQY, 4PQR, 4PQF, 4PPQ, 4PPN, 4PPG, 4PPF, 4POA, 4PO9, 4PO8, 4PO1, 4OQF, 2OFO, 2OES, 2OEP, 2OE2, 2ODW, 2G88

  • PubMed Abstract: 
  • The crystal structures of Mycobacterium smegmatis RecA (RecA(Ms)) and its complexes with ADP, ATPgammaS, and dATP show that RecA(Ms) has an expanded binding site like that in Mycobacterium tuberculosis RecA, although there are small differences betwe ...

    The crystal structures of Mycobacterium smegmatis RecA (RecA(Ms)) and its complexes with ADP, ATPgammaS, and dATP show that RecA(Ms) has an expanded binding site like that in Mycobacterium tuberculosis RecA, although there are small differences between the proteins in their modes of nucleotide binding. Nucleotide binding is invariably accompanied by the movement of Gln 196, which appears to provide the trigger for transmitting the effect of nucleotide binding to the DNA-binding loops. These observations provide a framework for exploring the known properties of the RecA proteins.


    Related Citations: 
    • Structural studies on MtRecA-nucleotide complexes: Insights into DNA and nucleotide binding and the structural signature of NTP recognition
      Datta, S.,Ganesh, N.,Chandra, N.R.,Muniyappa, K.,Vijayan, M.
      (2003) Proteins 50: 474
    • Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AlF(4): implications for decreased ATPase activity and molecular aggregation
      Datta, S.,Prabu, M.,Vaze, M.B.,Ganesh, N.,Chandra, N.R.,Muniyappa, K.,Vijayan, M.
      (2000) Nucleic Acids Res. 28: 4964


    Organizational Affiliation

    Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RecA
A
349Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)Mutation(s): 0 
Gene Names: recA
Find proteins for Q59560 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Go to UniProtKB:  Q59560
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AGS
Query on AGS

Download SDF File 
Download CCD File 
A
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.217 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 103.275α = 90.00
b = 103.275β = 90.00
c = 73.200γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
CNSrefinement
AMoREphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-07-22
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2012-02-15
    Type: Non-polymer description