1U20

Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29

Scarsdale, J.N.Peculis, B.A.Wright, H.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
U8 snoRNA-binding protein X29
A, B
212Xenopus laevisMutation(s): 0 
Gene Names: nudt16
EC: 3.6.1.62
Find proteins for Q6TEC1 (Xenopus laevis)
Go to UniProtKB:  Q6TEC1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.188α = 90.00
b = 82.990β = 90.00
c = 111.063γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SOLVEphasing
SHARPphasing
CCP4data scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-07-26
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance