1U05

Crystal structure of protein yfiH from Shigella flexneri, Pfam DUF152


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal Structure of Conserved Hypothetical Protein

Seetharaman, J.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
orf, conserved hypothetical proteinA, B243Shigella flexneriMutation(s): 0 
Gene Names: yfiHSF2654
EC: 2.4.2.1 (UniProt), 3.5.4.4 (UniProt), 2.4.2.28 (UniProt)
UniProt
Find proteins for A0A384KG77 (Shigella flexneri)
Explore A0A384KG77 
Go to UniProtKB:  A0A384KG77
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.217 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.683α = 90.25
b = 50.465β = 96.51
c = 55.265γ = 90.29
Software Package:
Software NamePurpose
CNSrefinement
CBASSdata collection
HKL-2000data scaling
AMoREphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-08-17
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-01-31
    Changes: Experimental preparation
  • Version 1.4: 2021-02-03
    Changes: Derived calculations, Structure summary