1TIP

THE BISPHOSPHATASE DOMAIN OF THE BIFUNCTIONAL RAT LIVER 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of a trapped phosphoenzyme during a catalytic reaction.

Lee, Y.H.Olson, T.W.Ogata, C.M.Levitt, D.G.Banaszak, L.J.Lange, A.J.

(1997) Nat Struct Biol 4: 615-618

  • DOI: 10.1038/nsb0897-615
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The crystal structure of the fructose-2,6-bisphosphatase domain trapped during the reaction reveal a phosphorylated His 258, and a water molecule immobilized by the product, fructose-6-phosphate. The geometry suggests that the dephosphorylation step ...

    The crystal structure of the fructose-2,6-bisphosphatase domain trapped during the reaction reveal a phosphorylated His 258, and a water molecule immobilized by the product, fructose-6-phosphate. The geometry suggests that the dephosphorylation step requires prior removal of the product for an 'associative in-line' phosphoryl transfer to the catalytic water.


    Related Citations: 
    • 6-Phosphofructo-2-Kinase/Fructose-2,6-Bisphosphatase: A Metabolic Signaling Enzyme
      Pilkis, S.J., Claus, T.H., Kurland, I.J., Lange, A.J.
      (1995) Annu Rev Biochem 64: 799
    • Preliminary X-Ray Analysis of a Truncated Form of Recombinant Fructose-2,6-Bisphosphatase
      Lee, Y.H., Lin, K., Okar, D., Alfano, N.L., Sarma, R., Pflugrath, J.W., Pilkis, S.J.
      (1994) J Mol Biol 235: 1147

    Organizational Affiliation

    Faculty of Science and Technology, Free University of Bolzano, Piazza Università 5, 39100, Bolzano, Italy, stefano.benini@unibz.it.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PHOSPHOENZYME INTERMEDIATE OF FRU-2,6-BISPHOSPHATASE
A, B
191Rattus norvegicusMutation(s): 1 
Gene Names: A CODING REGION WHICH COVERSPfkfb1
EC: 3.1.3.46 (PDB Primary Data), 2.7.1.105 (UniProt)
Find proteins for P07953 (Rattus norvegicus)
Go to UniProtKB:  P07953
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
F6P
Query on F6P

Download CCD File 
A, B
FRUCTOSE-6-PHOSPHATE
C6 H13 O9 P
BGWGXPAPYGQALX-ARQDHWQXSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
NEP
Query on NEP
A,B
L-PEPTIDE LINKINGC6 H10 N3 O5 PHIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.204 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.23α = 90
b = 56.52β = 94.48
c = 90.9γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-01-28
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance