1TGV

Structure of E. coli Uridine Phosphorylase complexed with 5-Fluorouridine and sulfate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structures of E. coli Uridine Phosphorylase

Bu, W.Settembre, E.C.Sanders, J.M.Begley, T.P.Ealick, S.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
uridine phosphorylase
A, B
256Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: udp
EC: 2.4.2.3
Find proteins for P12758 (Escherichia coli (strain K12))
Go to UniProtKB:  P12758
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
5UD
Query on 5UD

Download SDF File 
Download CCD File 
A, B
5-FLUOROURIDINE
C9 H11 F N2 O6
FHIDNBAQOFJWCA-UAKXSSHOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.175 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 149.972α = 90.00
b = 149.972β = 90.00
c = 49.566γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
CNSrefinement
CNSphasing
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-06-14
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance