1TFR | pdb_00001tfr

RNASE H FROM BACTERIOPHAGE T4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 
    0.290 (Depositor) 
  • R-Value Work: 
    0.205 (Depositor), 0.194 (DCC) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1TFR

This is version 1.3 of the entry. See complete history

Literature

Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins.

Mueser, T.C.Nossal, N.G.Hyde, C.C.

(1996) Cell 85: 1101-1112

  • DOI: https://doi.org/10.1016/s0092-8674(00)81310-0
  • Primary Citation Related Structures: 
    1TFR

  • PubMed Abstract: 

    Bacteriophage T4 RNase H is a 5' to 3' exonuclease that removes RNA primers from the lagging strand of the DNA replication fork and is a member of the RAD2 family of eukaryotic and prokaryotic replication and repair nucleases. The crystal structure of the full-length native form of T4 RNase H has been solved at 2.06 angstroms resolution in the presence of Mg2+ but in the absence of nucleic acids. The most conserved residues are clustered together in a large cleft with two Mg2+ in the proposed active site. This structure suggests the way in which the widely separated conserved regions in the larger nucleotide excision repair proteins, such as human XPG, could assemble into a structure like that of the smaller replication nucleases.


  • Organizational Affiliation
    • Laboratory of Structural Biology Research, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland 20892-2755, USA.

Macromolecule Content 

  • Total Structure Weight: 35.66 kDa 
  • Atom Count: 2,506 
  • Modeled Residue Count: 283 
  • Deposited Residue Count: 305 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
T4 RNASE H305Tequatrovirus T4Mutation(s): 0 
EC: 3.1.26.4
UniProt
Find proteins for P13319 (Enterobacteria phage T4)
Explore P13319 
Go to UniProtKB:  P13319
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP13319
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free:  0.290 (Depositor) 
  • R-Value Work:  0.205 (Depositor), 0.194 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.47α = 90
b = 87.58β = 90
c = 54.56γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement
PROCESSdata reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-11-08
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-02-14
    Changes: Data collection, Database references, Derived calculations, Other