1TD4

Crystal structure of VSHP_BPP21 in space group H3 with high resolution.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Kinetic Stability and Crystal Structure of the Viral Capsid Protein SHP.

Forrer, P.Chang, C.Ott, D.Wlodawer, A.Plueckthun, A.

(2004) J.Mol.Biol. 344: 179-193

  • DOI: 10.1016/j.jmb.2004.09.030
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • SHP, the capsid-stabilizing protein of lambdoid phage 21, is highly resistant against denaturant-induced unfolding. We demonstrate that this high functional stability of SHP is due to a high kinetic stability with a half-life for unfolding of 25 days ...

    SHP, the capsid-stabilizing protein of lambdoid phage 21, is highly resistant against denaturant-induced unfolding. We demonstrate that this high functional stability of SHP is due to a high kinetic stability with a half-life for unfolding of 25 days at zero denaturant, while the thermodynamic stability is not unusually high. Unfolding experiments demonstrated that the trimeric state (also observed in crystals and present on the phage capsid) of SHP is kinetically stable in solution, while the monomer intermediate unfolds very rapidly. We also determined the crystal structure of trimeric SHP at 1.5A resolution, which was compared to that of its functional homolog gpD. This explains how a tight network of H-bonds rigidifies crucial interpenetrating residues, leading to the observed extremely slow trimer dissociation or denaturation. Taken as a whole, our results provide molecular-level insights into natural strategies to achieve kinetic stability by taking advantage of protein oligomerization. Kinetic stability may be especially needed in phage capsids to allow survival in harsh environments.


    Organizational Affiliation

    Biochemisches Institut, Universität Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Head decoration protein
A
115Enterobacteria phage P21Mutation(s): 0 
Gene Names: shp
Find proteins for P36275 (Enterobacteria phage P21)
Go to UniProtKB:  P36275
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
DSN
Query on DSN
A
D-PEPTIDE LINKINGC3 H7 N O3

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.196 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 53.909α = 90.00
b = 53.909β = 90.00
c = 77.456γ = 120.00
Software Package:
Software NamePurpose
AMoREphasing
SCALEPACKdata scaling
SHELXmodel building
SHELXL-97refinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-11-02
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance