Download MendeleyCrystal structure of glycerol dehydrogenase from Schyzosaccharomyces pombe
Mulichak, A.M.To be published.
1TA9
Crystal structure of glycerol dehydrogenase from Schizosaccharomyces pombe
- PDB DOI: https://doi.org/10.2210/pdb1TA9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Schizosaccharomyces pombe
- Mutation(s): No
- Deposited: 2004-05-19 Released: 2005-08-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.209
- R-Value Work: 0.186
- R-Value Observed: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| glycerol dehydrogenase | 450 | Schizosaccharomyces pombe | Mutation(s): 0 EC: 1.1.1.6 |  | |
UniProt | |||||
Find proteins for O13702 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore O13702 Go to UniProtKB: O13702 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O13702 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | G [auth A], H [auth A], K [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ALA Query on ALA | E [auth A], F [auth A] | ALANINE C3 H7 N O2 QNAYBMKLOCPYGJ-REOHCLBHSA-N |  | Ligand Interaction | |
| ZN Query on ZN | C [auth A], I [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| K Query on K | D [auth A], J [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.209
- R-Value Work: 0.186
- R-Value Observed: 0.186
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 105.98 | α = 90 |
| b = 105.98 | β = 90 |
| c = 140.63 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| CNS | refinement |
Entry History
Deposition Data
- Released Date: 2005-08-16 Deposition Author(s): Mulichak, A.M.
Revision History (Full details and data files)
- Version 1.0: 2005-08-16
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description
